Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs78611880 chr11:93152343 TATA/T 5.99E-5 110 6.13 14.13 16.3 KM Plot
LAML rs78835721 chr13:114604273 A/G 8.0E-7 107 13.1 18.28 0.5 KM Plot
LAML rs78864120 chr7:105175773 TTCAAGCGATTCTTC/T 0.000125 110 15.7 13.1 0 KM Plot
LAML rs788807 chr1:202292074 G/A 6.68E-5 109 15.23 9.1 0 KM Plot
LAML rs78988610 chr7:135639456 C/T 7.36E-5 111 13.15 28.93 0 KM Plot
LAML rs7904597 chr10:134968816 C/T 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs7910196 chr10:13810059 A/G 0.000156 111 15.17 16.23 0 KM Plot
LAML rs7915916 chr10:134316264 G/C 0.000172 110 0 21.27 12.18 KM Plot
LAML rs79192570 chr13:114625570 G/A 4.7E-7 111 13.1 19.82 0.5 KM Plot
LAML rs7923159 chr10:134968556 G/A 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs7933213 chr11:34294185 C/T 0.000118 111 13.2 16.3 0 KM Plot
LAML rs79379247 chr6:34489516 G/A 0.000141 106 16.3 8.1 0 KM Plot
LAML rs79380819 chr2:1055058 A/T 1.8E-8 105 15.17 16.3 0 KM Plot
LAML rs7944639 chr11:33193526 A/G 6.55E-5 110 16.73 6.13 22.28 KM Plot
LAML rs79465400 chr16:71721907 G/T 0.000157 111 15.2 14.67 0 KM Plot